tibljТуберкулез и болезни легкихTuberculosis and Lung Diseases2075-12302542-1506Медицинские знания и технологии10.21292/2075-1230-2018-96-8-59-65tiblj-1167Research ArticleОБЗОРREVIEWПРЕДСТАВЛЕНИЯ ОБ ЭВОЛЮЦИИ ТУБЕРКУЛЕЗНЫХ МИКОБАКТЕРИЙUNDERSTANDING OF MYCOBACTERIUM TUBERCULOSIS EVOLUTIONДобинВ. Л.DobinV. L.

Добин Виталий Лазаревич доктор медицинских наук, профессор, заведующий кафедрой фтизиатрии с курсом лучевой диагностики.

390026, г. Рязань, ул. Высоковольтная, д. 9.

Vitaly L. Dobin Doctor of Medical Sciences, Professor, Head of Tuberculosis Department with Training in X-ray Diagnostics.

9, Vysokovoltnaya St., Perm, 390026

viladob@gmail.comФГБОУ ВО «Рязанский государственный медицинский университет им. акад. И. П. Павлова» МЗ РФ.РоссияPavlov Razyan State Medical University.Russian Federation2018180920189685965Copyright © Добин В.Л., 20182018Добин В.Л.Dobin V.L.Данная работа распространяется под лицензией Creative Commons Attribution 4.0.This work is licensed under a Creative Commons Attribution 4.0 License.https://www.tibl-journal.com/jour/article/view/1167эволюциявозбудитель туберкулезамикобактерии туберкулезного комплексаevolutionthe causative agent of tuberculosisM. tuberculosis complexReferencesМокроусов И. В. Генетическое разнообразие и эволюция Mуcobacterium tuberculosis: Автореф. дис. … д-ра мед. наук. ‒ СПб., 2009. – 40 с.Mokrousov I.V. Geneticheskaya raznoobraziye i evolyutsiya Mycobacterium tuberculosis. Avtoref. diss. dokt. biol. nauk. [Genetic variety and evolution of Mycobacterium tuberculosis. Doct. Diss.] St. Petersburg, 2009, 40 p.Прозоров А. А., Даниленко В. Н. Микобактерии туберкулезного комлекса: геномика, молекулярная эпидемиология, пути эволюции // Усп. совр. биологии. ‒ 2011. ‒ № 3. ‒ С. 227-243.Prozorov А.А., Danilenko V.N. Mycobacteria of tuberculous complex: genomics, molecular epidemiology, ways of evolution. Usp. Sovr. Biologii, 2011, no. 3, pp. 227-243. (In Russ.)Baker L., Brown N., Maiden M. et al. Silent nucleotide polymorphisms and a phylogeny for Mycobacterium tuberculosis // Emer. Inf. Dis. ‒ 2004. ‒ Vol. 10, № 9. ‒ 1568-1574.Baker L., Brown N., Maiden M. et al. Silent Nucleotide Polymorphisms and a Phylogeny for Mycobacterium tuberculosis. Emer. Inf. Dis., 2004, vol. 10, no. 9, pp. 1568-1574.Bentley S. D., Comas I., Bryant J. M., Walker D., Smith N. H. et al. The genome of Mycobacterium africanum West African 2 reveals a lineage-specific locus and genome erosion common to the M. tuberculosis complex // PLoS Negl. Trop. Dis. ‒ 2012. ‒ Vol. 6, № 2. ‒ P. e1552.Bentley S.D., Comas I., Bryant J.M., Walker D., Smith N.H. et al. The genome of Mycobacterium africanum West African 2 reveals a lineage-specific locus and genome erosion common to the M. tuberculosis complex. PLoS Negl. Trop. Dis., 2012, vol. 6, no. 2, pp. e1552.Bos К. et al. Pre-Columbian mycobacterial genomes reveal seals as a source of New World human tuberculosis // Nature. ‒ 2014. ‒ Vol. 514. ‒ Р. 494-497.Bos К. et al. Pre-Columbian mycobacterial genomes reveal seals as a source of New World human tuberculosis. Nature, 2014, vol. 514, pp. 494-497.Brosch R. et al. A new evolutionary scenario for the Mycobacterium tuberculosis complex // Proc. Natl. Acad. Sci. USA. ‒ 2002. ‒ Vol. 99. ‒ Р. 3684-3689.Brosch R. et al. A new evolutionary scenario for the Mycobacterium tuberculosis complex. Proc. Natl. Acad. Sci. USA, 2002, vol. 99, pp. 3684-3689.Comas I. et al. Out-ol-Alrica migration and Neolithic coexpansion of Mycobacterium tuberculosis with modern humans // Nature Genet. ‒ 2013. ‒ Vol. 45. ‒ Р. ‒ 1176-1182.Comas I. et al. Out-ol-Alrica migration and Neolithic coexpansion of Mycobacterium tuberculosis with modern humans. Nature Genet., 2013, vol. 45, pp. 1176-1182.Comas I., Chakravartti J., Small P. M., Galagan J., Niemann S. et al. Human T cell epitopes of Mycobacterium tuberculosis are evolutionarily hyperconserved // Nat. Genet. ‒ 2010. ‒ Vol. 42, № 6. ‒ P. 498-503.Comas I., Chakravartti J., Small P.M., Galagan J., Niemann S. et al. Human T cell epitopes of Mycobacterium tuberculosis are evolutionarily hyperconserved. Nat. Genet., 2010, vol. 42, no. 6, pp. 498-503.Djelouadji Z., Raoult D., Drancourt M. Palaeogenomics of Mycobacterium tuberculosis: epidemic bursts with a degrading genome // Lancet Infect. Dis. ‒ 2011. ‒ Vol. 11. ‒ Р. 641-650.Djelouadji Z., Raoult D., Drancourt M. Palaeogenomics of Mycobacterium tuberculosis: epidemic bursts with a degrading genome. Lancet Infect. Dis., 2011, vol. 11, pp. 641-650.Dos Vultos T., Mestre O., Golec M. et al. Evolution and diversity of clonal bacteria: The Paradigm of Mycobacterium tuberculosis // Plos ONE. ‒ 2008. ‒ Vol. 3, № 2. ‒ Р. 1538-1551.Dos Vultos T., Mestre O., Golec M. et al. Evolution and Diversity of Clonal Bacteria: The Paradigm of Mycobacterium tuberculosis. Plos ONE, 2008, vol. 3, no. 2, pp. 1538-1551.Ernst J., Trevejo-Nunez G. Genomics and the evolution, pathogenesis, and diagnosis of tuberculosis // Clin. Invest. ‒ 2007. ‒ Vol. 117, № 7. ‒ 1738-1745.Ernst J., Trevejo-Nunez G. Genomics and the evolution, pathogenesis, and diagnosis of tuberculosis. Clin. Invest., 2007, vol. 117, no. 7, pp. 1738-1745.Fabre М., Koeck J., Le Fleche P., Simon F., Herve V. et al. High genetic diversity revealed by variable-number tandem repeat genotyping and analysis of hsp65 gene polymorphism in a large collection of “Mycobacterium canetti” strains indicates that the M. tuberculosis complex is a recently emerged clone of “M. canetti” // J. Clin. Microbiol. ‒ 2004. ‒ Vol. 42. ‒ 3248-3255.Fabre М., Koeck J., Le Fleche P., Simon F., Herve V. et al. High genetic diversity revealed by variable-number tandem repeat genotyping and analysis of hsp65 gene polymorphism in a large collection of “Mycobacterium canetti” strains indicates that the M. tuberculosis complex is a recently emerged clone of “M. canetti”. J. Clin. Microbiol., 2004, vol. 42, pp. 3248-3255.Fleisclnmmn R., Alland D., Eisen J., Carpenter L., White O., et al. Whole-genome comparison of Mycobacterium tuberculosis clinical and laboratory strains // J. Bacteriol. ‒ 2002. ‒ Vol. 184. ‒ Р. 5479-5490.Fleisclnmmn R., Alland D., Eisen J., Carpenter L., White O., et al. Whole-genome comparison of Mycobacterium tuberculosis clinical and laboratory strains. J. Bacteriol., 2002, vol. 184, pp. 5479-5490.Fletcher H., Donoghue H., Holton I., Pap I., Spigelman M. Widespread occurrence of Mycobacterium tuberculosis DNA from 18th-19th century Hungarians // Am. J. Phys. Anthropol. ‒ 2003. ‒ Vol. 120. ‒ Р. 144-152.Fletcher H., Donoghue H., Holton I., Pap I., Spigelman M. Widespread occurrence of Mycobacterium tuberculosis DNA from 18th-19th century Hungarians. Am. J. Phys. Anthropol., 2003, vol. 120, pp. 144-152.Fletcher H., Donoghue H., Taylor G., van der Zanden A. Molecular analysis of Mycobacterium tuberculosis DNA from a family of 18th century Hungarians // Microbiology. ‒ 2003. ‒ Vol. 149. ‒ Р. 143-151.Fletcher H., Donoghue H., Taylor G., van der Zanden A. Molecular analysis of Mycobacterium tuberculosis DNA from a family of 18th century Hungarians. Microbiology, 2003, vol. 149, pp. 143-151.Garnier T., Eiglmeier K., Camus J. C., Medina N., Mansoor H. et al. The complete genome sequence of Mycobacterium bovis // Proc. Natl. Acad. Sci. USA. ‒ 2003. ‒ Vol. 100, № 13. ‒ P. 7877-7882.Garnier T., Eiglmeier K., Camus J.C., Medina N., Mansoor H. et al. The complete genome sequence of Mycobacterium bovis. Proc. Natl. Acad. Sci., USA, 2003, vol. 100, no. 13, pp. 7877-7882.Glynn J., Whiteley J., Bifani P., Kremer K., van Soolingen D. Worldwide occurrence of Beijing W strains of Mycobacterium tuberculosis a systematic review // Emer. Inf. Dis. ‒ 2002. ‒ Vol. 8. ‒ Р. 843-849.Glynn J., Whiteley J., Bifani P., Kremer K., van Soolingen D. Worldwide occurrence of Beijing W strains of Mycobacterium tuberculosis a systematic review. Emer. Inf. Dis., 2002, vol. 8, pp. 843-849.Gutacker M., Smoot J., Migliaccio G., Ricklefs S., Hua S. et al. Genome-wide analysis of synonymous single nucleotide polymorphisms in Mycobacierium tuberculosis complex organisms: Resolution of genetic relationships among closely related microbial strains // Genetics. ‒ 2002. ‒ Vol. 162. ‒ Р. 1533-1543.Gutacker M., Smoot J., Migliaccio G., Ricklefs S., Hua S. et al. Genome-wide analysis of synonymous single nucleotide polymorphisms in Mycobacierium tuberculosis complex organisms: Resolution of genetic relationships among closely related microbial strains. Genetics, 2002, vol. 162, pp. 1533-1543.Gutierrez M. et al. Ancient origin and gene mosaicism of the progenitor of Mycobacterium tuberculosis // PLoS Pathogens. ‒ 2005. ‒ Vol. 1. ‒ Р. e5.Gutierrez M. et al. Ancient origin and gene mosaicism of the progenitor of Mycobacterium tuberculosis. PLoS Pathogens., 2005, vol. 1, pp. e5.Hershkovitz l. el al. Detection and molecular characterization of 9,000-year-old Mycobacterium tuberculosis from a Neolithic settlement in the Eastern Mediterranean // PLoS ONE. ‒ 2008. ‒ Vol. 3. ‒ Р. 3426.Hershkovitz l. el al. Detection and molecular characterization of 9,000-year-old Mycobacterium tuberculosis from a Neolithic settlement in the Eastern Mediterranean. PLoS ONE, 2008, vol. 3, pp. 3426.Hughes A., Friedman R., Murray M. Genomewide pattern of synonymous nucleotide substitution in two complete genomes of Mycobacterium tuberculosis // Emer. Inf. Dis. ‒ 2002. ‒ Vol. 8. ‒ Р. 1342-1346.Hughes A., Friedman R., Murray M. Genomewide pattern of synonymous nucleotide substitution in two complete genomes of Mycobacterium tuberculosis. Emer. Inf. Dis., 2002, vol. 8, pp. 1342-1346.Jonsson H., Ginolhac A., Schubert M., Johnson P. mapDamage.2.0: fast approximate Bayesian estimates of ancient DNA damage parameters // Bioinformatics. ‒ 2013. ‒ Vol. 29. ‒ Р. 1682-1684.Jonsson H., Ginolhac A., Schubert M., Johnson P. mapDamage.2.0: fast approximate Bayesian estimates of ancient DNA damage parameters. Bioinformatics, 2013, vol. 29, pp. 1682-1684.Kamerbeek J., Schools L., Kolk A., van Agterveld M., van Soolingen D. et al. Simultaneous detection and strain differentiation of Mycobacterium tuberculosis for diagnosis and epidemiology // J. Clin. Microbiol. ‒ 1997. ‒ Vol. 35. ‒ Р. 907-914.Kamerbeek J., Schools L., Kolk A., van Agterveld M., van Soolingen D. et al. Simultaneous detection and strain differentiation of Mycobacterium tuberculosis for diagnosis and epidemiology. J. Clin. Microbiol., 1997, vol. 35, pp. 907-914.Karbou R. A., van Pittiust N., Namouchi A. Insights into the evolutionary history of tubercle bacilli as disclosed by genetic rearrangements within a PE PGRS duplicated gene pair // BMC Evoluctionary Biology. ‒ 2006. ‒ doi 10 1:86/1471-2148 6 107Karbou R.A., van Pittiust N., Namouchi A. Insights into the evolutionary history of tubercle bacilli as disclosed by genetic rearrangements within a PE PGRS duplicated gene pair. BMC Evoluctionary Biology, 2006, doi 10 1:86/1471-2148 6 107Mostowy S., Cousins D., Brinkman J., Aranaz A., Behr M. Genomic deletions suggest a phylogeny for the Mycobacterium tuberculosis complex // J. Infect. Dis. 2002. ‒ Vol. 186. ‒ Р. 74-80.Mostowy S., Cousins D., Brinkman J., Aranaz A., Behr M. Genomic deletions suggest a phylogeny for the Mycobacterium tuberculosis Complex. J. Infect. Dis., 2002, vol. 186, pp. 74-80.Muller R., Roberts C., Brown T. Genotyping of ancient Mycobacterium tuberculosis strains reveals historic genetic diversity // Proc. Biol. Sci. ‒ 2014. ‒ Vol. 281. ‒ Р. 2013-3236.Muller R., Roberts C., Brown T. Genotyping of ancient Mycobacterium tuberculosis strains reveals historic genetic diversity. Proc. Biol. Sci., 2014, vol. 281, pp. 2013-3236.Nicklisсh N. et al. Rib lesions in skeletons from early neolithic sites in Central Germany: on the trail of tuberculosis at the onset of agriculture // Am. J. Phys. Anthropol. ‒ 2012. ‒ Vol. 149. ‒ Р. 391-404.Nicklisсh N. et al. Rib lesions in skeletons from early neolithic sites in Central Germany: on the trail of tuberculosis at the onset of agriculture. Am. J. Phys. Anthropol., 2012, vol. 149, pp. 391-404.Parwati I., van Crevel R., van Soolingen D. Possible underlying mechanisms for successful emergence of the Mycobacterium tuberculosis Beijing genotype strains // Lancet Infect. Dis. ‒ 2010. ‒ Vol. 10, № 2. ‒ P. 103-111.Parwati I., van Crevel R., van Soolingen D. Possible underlying mechanisms for successful emergence of the Mycobacterium tuberculosis Beijing genotype strains. Lancet Infect. Dis., 2010, vol. 10, no. 2, pp. 103-111.Rothschild В. et al. Mycobacterium tuberculosis complex DNA from an extinct bison dated 17,000 years before the present // Clin. Infect. Dis. ‒ 2001. ‒ Vol. 33. ‒ Р. 305-311.Rothschild В. et al. Mycobacterium tuberculosis complex DNA from an extinct bison dated 17,000 years before the present. Clin. Infect. Dis., 2001, vol. 33, pp. 305-311.Semaw S., Simpson S., Quade J., Reime P., Butler R. et al. Early Pliocene gominids from Gona, Ethiopia // Nature. ‒ 2005. ‒ Vol. 433. ‒ Р. 301-305.Semaw S., Simpson S., Quade J., Reime P., Butler R. et al. Early Pliocene gominids from Gona, Ethiopia. Nature, 2005, vol. 433, pp. 301-305.Sreevatsan S., Pan X., Stockbauer K., Connell N., Kreiswirth B. et al. Restricted structural gene polymorphism in the Mycobacterium tuberculosis complex indicates evolutionarily recent global dissemination // Proc. Natl. Acad. Sci. USA. ‒ 1997. ‒ Vol. 94. ‒ Р. 9869-9874.Sreevatsan S., Pan X., Stockbauer K., Connell N., Kreiswirth B. et al. Restricted structural gene polymorphism in the Mycobacterium tuberculosis complex indicates evolutionarily recent global dissemination. Proc. Natl. Acad. Sci. USA, 1997, vol. 94, pp. 9869-9874.Supply P., Marceau1 M., Mangenot S. et al. Genome analysis of smooth tubercle bacilli provides insights into ancestry and pathoadaptation of the etiologic agent of tuberculosis // Nat. Genet. ‒ 2013. ‒ Vol. 15, № 2. ‒ Р. 172-179.Supply P., Marceau1 M., Mangenot S. et al. Genome analysis of smooth tubercle bacilli provides insights into ancestry and pathoadaptation of the etiologic agent of tuberculosis. Nat. Genet., 2013, vol. 15, no. 2, pp. 172-179.Taylor G., Murphy E., Hopkins., Rutland P., Chisiov Y. First report of Mycobacterium bovis DNA in human remains from the Iron Age // Microbiology. ‒ 2007. ‒ Vol. 153. ‒ Р. 1243-1249.Taylor G., Murphy E., Hopkins., Rutland P., Chisiov Y. First report of Mycobacterium bovis DNA in human remains from the Iron Age. Microbiology, 2007, vol. 153, pp. 1243-1249.Tsolaki G., Hirsh E., De Riemer K. et al. Functional and evolutionary genomics of Mycobacterium tuberculosis: Insights from genomic deletions in 100 strains // PNAS. ‒ 2004 ‒ Vol. 101, № 14. ‒ Р. 4865-4870.Tsolaki G., Hirsh E., De Riemer K. et al. Functional and evolutionary genomics of Mycobacterium tuberculosis: Insights from genomic deletions in 100 strains. PNAS, 2004, vol. 101, no. 14, pp. 4865-4870.

The authors declare that there are no conflicts of interest present.